Index

A

active_activities (makeprov.core.Session attribute) (makeprov.Session attribute) ActivityNode (class in makeprov.prov) agent (makeprov.prov.AssociationNode attribute) AgentNode (class in makeprov.prov) all_children() (makeprov.InDir method) (makeprov.OutDir method) (makeprov.paths.InDir method) (makeprov.paths.OutDir method)

apply() (makeprov.Config method) (makeprov.config.Config method) apply_context() (in module makeprov.prov) ArtifactRef (class in makeprov) (class in makeprov.refs) as_inpath() (makeprov.OutPath method) (makeprov.paths.OutPath method) AssociationNode (class in makeprov.prov)

B

base_iri (makeprov.config.ProvenanceConfig attribute) (makeprov.prov.IriMinter attribute) (makeprov.prov.Prov attribute) (makeprov.ProvenanceConfig attribute) BaseNode (class in makeprov.prov) blob (makeprov.forges.ForgeProfile attribute)

blob_prefix() (makeprov.forges.ForgeProfile method) build() (in module makeprov) (in module makeprov.core) build_all() (in module makeprov) (in module makeprov.core) build_prov_from_reprozip() (in module makeprov.reprozip) build_prov_from_snakemake() (in module makeprov.snakemake)

C

CachedDownload (class in makeprov) (class in makeprov.paths) CacheIntegrityError children (makeprov.InDir property) (makeprov.OutDir property) (makeprov.paths.InDir property) (makeprov.paths.OutDir property) clone_with() (makeprov.Config method) (makeprov.config.Config method) commands (makeprov.core.Session attribute) (makeprov.Session attribute)

comment (makeprov.prov.ActivityNode attribute) Config (class in makeprov) (class in makeprov.config) context (makeprov.config.ProvenanceConfig attribute) (makeprov.prov.Prov attribute) (makeprov.ProvenanceConfig attribute) context_url (makeprov.config.ProvenanceConfig attribute) (makeprov.ProvenanceConfig attribute) convert_reprozip_graph() (in module makeprov.reprozip) create() (makeprov.prov.Prov class method)

D

dep_templates (makeprov.core.Rule attribute) DepNode (class in makeprov.prov) deps (makeprov.core.Rule attribute) digest (makeprov.ArtifactRef attribute) (makeprov.refs.ArtifactRef attribute)

download_file() (in module makeprov.paths) dry_run (makeprov.config.ProvenanceConfig attribute) (makeprov.ProvenanceConfig attribute) dry_run_build() (in module makeprov) (in module makeprov.core) duration (makeprov.prov.ActivityNode attribute)

E

email (makeprov.prov.PersonNode attribute) emit_plan_graph (makeprov.config.ProvenanceConfig attribute) (makeprov.ProvenanceConfig attribute) endedAtTime (makeprov.prov.ActivityNode attribute) EnvNode (class in makeprov.prov) exists (makeprov.ArtifactRef property) (makeprov.refs.ArtifactRef property) explain() (in module makeprov) (in module makeprov.core)

extent (makeprov.ArtifactRef attribute) (makeprov.prov.FileEntity attribute) (makeprov.refs.ArtifactRef attribute) external() (makeprov.ArtifactRef class method) (makeprov.refs.ArtifactRef class method) extra (makeprov.ArtifactRef attribute) (makeprov.refs.ArtifactRef attribute)

F

fields_subclass_first() (makeprov.RDFMixin class method) (makeprov.rdfmixin.RDFMixin class method) file() (makeprov.InDir method) (makeprov.OutDir method) (makeprov.paths.InDir method) (makeprov.paths.OutDir method) (makeprov.prov.IriMinter method) file_segment (makeprov.prov.IriMinter attribute) FileEntity (class in makeprov.prov) flush_prov_buffer() (in module makeprov.core)

force (makeprov.config.ProvenanceConfig attribute) (makeprov.ProvenanceConfig attribute) forge_profiles (makeprov.config.ProvenanceConfig attribute) (makeprov.ProvenanceConfig attribute) ForgeProfile (class in makeprov.forges) format (makeprov.prov.FileEntity attribute) frame (makeprov.config.ProvenanceConfig attribute) (makeprov.ProvenanceConfig attribute) from_jsonld() (makeprov.RDFMixin class method) (makeprov.rdfmixin.RDFMixin class method) func (makeprov.core.Rule attribute)

G

generated (makeprov.prov.ActivityNode attribute) generatedAtTime (makeprov.prov.GraphEntity attribute) get() (makeprov.Config class method) (makeprov.config.Config class method)

get_d3dag_json() (in module makeprov.snakemake) get_detailed_summary() (in module makeprov.snakemake) GraphEntity (class in makeprov.prov)

H

hadPlan (makeprov.prov.AssociationNode attribute) hasVersion (makeprov.prov.AgentNode attribute) (makeprov.prov.EnvNode attribute) (makeprov.prov.PlanNode attribute)

hosts (makeprov.forges.ForgeProfile attribute)

I

id (makeprov.ArtifactRef attribute) (makeprov.prov.BaseNode attribute) (makeprov.refs.ArtifactRef attribute) identifier (makeprov.prov.FileEntity attribute) InDir (class in makeprov) (class in makeprov.paths)

InPath (class in makeprov) (class in makeprov.paths) IriMinter (class in makeprov.prov) is_external (makeprov.ArtifactRef property) (makeprov.refs.ArtifactRef property) is_stream (makeprov.paths.ProvPath property) (makeprov.ProvPath property)

L

label (makeprov.ArtifactRef attribute) (makeprov.prov.AgentNode attribute) (makeprov.prov.DepNode attribute) (makeprov.prov.EnvNode attribute) (makeprov.prov.PlanNode attribute) (makeprov.refs.ArtifactRef attribute)

list_rules() (in module makeprov) (in module makeprov.core) list_targets() (in module makeprov) (in module makeprov.core) load_forges() (in module makeprov.forges) local() (makeprov.ArtifactRef class method) (makeprov.refs.ArtifactRef class method)

M

main() (in module makeprov) (in module makeprov.config) (in module makeprov.reprozip) (in module makeprov.snakemake) makeprov module makeprov.config module makeprov.core module makeprov.forges module makeprov.meta module makeprov.paths module makeprov.prov module makeprov.rdfmixin module makeprov.refs module makeprov.reprozip module

makeprov.snakemake module media_type (makeprov.ArtifactRef attribute) (makeprov.refs.ArtifactRef attribute) merge (makeprov.config.ProvenanceConfig attribute) (makeprov.ProvenanceConfig attribute) merge() (makeprov.prov.Prov class method) mint() (makeprov.prov.IriMinter method) modified (makeprov.ArtifactRef attribute) (makeprov.prov.FileEntity attribute) (makeprov.refs.ArtifactRef attribute) module makeprov makeprov.config makeprov.core makeprov.forges makeprov.meta makeprov.paths makeprov.prov makeprov.rdfmixin makeprov.refs makeprov.reprozip makeprov.snakemake

N

name (makeprov.core.Rule attribute) (makeprov.forges.ForgeProfile attribute) (makeprov.prov.PersonNode attribute) (makeprov.prov.Prov attribute)

needs_update() (in module makeprov) (in module makeprov.core) new_session() (in module makeprov) (in module makeprov.core) normalize_remote() (in module makeprov.forges)

O

open() (makeprov.CachedDownload method) (makeprov.InPath method) (makeprov.OutPath method) (makeprov.paths.CachedDownload method) (makeprov.paths.InPath method) (makeprov.paths.OutPath method) (makeprov.paths.ProvPath method) (makeprov.ProvPath method) operatingSystem (makeprov.prov.AgentNode attribute)

out_fmt (makeprov.config.ProvenanceConfig attribute) (makeprov.ProvenanceConfig attribute) out_parsers (makeprov.core.Rule attribute) out_templates (makeprov.core.Rule attribute) OutDir (class in makeprov) (class in makeprov.paths) OutPath (class in makeprov) (class in makeprov.paths) outputs (makeprov.core.Rule attribute)

P

path (makeprov.ArtifactRef attribute) (makeprov.refs.ArtifactRef attribute) pattern_rules (makeprov.core.Session attribute) (makeprov.Session attribute) pep503_normalize() (in module makeprov.prov) PersonNode (class in makeprov.prov) phony (makeprov.core.Rule attribute) pinned (makeprov.prov.IriMinter attribute) plan() (in module makeprov) (in module makeprov.core) PlanGraph (class in makeprov.prov) PlanNode (class in makeprov.prov) prefix (makeprov.prov.IriMinter attribute) project_metadata() (in module makeprov.prov) Prov (class in makeprov.prov) prov_buffers (makeprov.core.Session attribute) (makeprov.Session attribute)

prov_dir (makeprov.config.ProvenanceConfig attribute) (makeprov.ProvenanceConfig attribute) prov_path (makeprov.config.ProvenanceConfig attribute) (makeprov.ProvenanceConfig attribute) prov_stream (makeprov.core.Session attribute) (makeprov.Session attribute) ProvDoc (class in makeprov.prov) provenance (makeprov.prov.Prov attribute) (makeprov.prov.ProvDoc attribute) ProvenanceConfig (class in makeprov) (class in makeprov.config) ProvenanceWriteError, [1] ProvMeta (class in makeprov) (class in makeprov.meta) ProvPath (class in makeprov) (class in makeprov.paths)

Q

qualifiedAssociation (makeprov.prov.ActivityNode attribute)

R

RDFMixin (class in makeprov) (class in makeprov.rdfmixin) record_environment (makeprov.config.ProvenanceConfig attribute) (makeprov.ProvenanceConfig attribute) record_user (makeprov.config.ProvenanceConfig attribute) (makeprov.ProvenanceConfig attribute) repo_root (makeprov.prov.IriMinter attribute) requires (makeprov.prov.EnvNode attribute) (makeprov.prov.PlanGraph attribute) (makeprov.prov.PlanNode attribute) resolve() (makeprov.ArtifactRef method) (makeprov.refs.ArtifactRef method) resolve_forge() (in module makeprov.forges) resolve_iris() (in module makeprov.prov) resolve_target() (in module makeprov) (in module makeprov.core)

resolved (makeprov.prov.EnvNode attribute) results (makeprov.prov.Prov attribute) root_targets() (in module makeprov) (in module makeprov.core) Rule (class in makeprov.core) rule (makeprov.prov.PlanGraph attribute) rule() (in module makeprov) (in module makeprov.core) rules_by_name (makeprov.core.Session attribute) (makeprov.Session attribute) rules_by_target (makeprov.core.Session attribute) (makeprov.Session attribute) run_id (makeprov.config.ProvenanceConfig attribute) (makeprov.ProvenanceConfig attribute)

S

Session (class in makeprov) (class in makeprov.core) set() (makeprov.Config class method) (makeprov.config.Config class method) sha256 (makeprov.prov.FileEntity attribute) source (makeprov.prov.AgentNode attribute) (makeprov.prov.PlanNode attribute) span (class in makeprov) start_prov_buffer() (in module makeprov.core) startedAtTime (makeprov.prov.ActivityNode attribute) stream (makeprov.config.ProvenanceConfig attribute) (makeprov.ProvenanceConfig attribute)

stream_name (makeprov.paths.ProvPath property) (makeprov.ProvPath property) strict (makeprov.config.ProvenanceConfig attribute) (makeprov.ProvenanceConfig attribute) subdir() (makeprov.InDir method) (makeprov.OutDir method) (makeprov.paths.InDir method) (makeprov.paths.OutDir method) subdirs (makeprov.InDir property) (makeprov.OutDir property) (makeprov.paths.InDir property) (makeprov.paths.OutDir property)

T

title (makeprov.prov.EnvNode attribute) to_dot() (in module makeprov) (in module makeprov.core) to_graph() (makeprov.prov.Prov method) (makeprov.RDFMixin method) (makeprov.rdfmixin.RDFMixin method)

to_jsonld() (makeprov.prov.Prov method) (makeprov.RDFMixin method) (makeprov.rdfmixin.RDFMixin method) type (makeprov.prov.BaseNode attribute) types (makeprov.ArtifactRef attribute) (makeprov.refs.ArtifactRef attribute)

U

UnresolvedArtifactError, [1]

used (makeprov.prov.ActivityNode attribute)

V

verify() (makeprov.CachedDownload method) (makeprov.paths.CachedDownload method)

W

wasAssociatedWith (makeprov.prov.ActivityNode attribute) wasAttributedTo (makeprov.prov.GraphEntity attribute) wasDerivedFrom (makeprov.prov.EnvNode attribute)

wasGeneratedBy (makeprov.prov.FileEntity attribute) (makeprov.prov.GraphEntity attribute) working_tree_is_dirty() (in module makeprov.prov) write() (makeprov.prov.Prov method)