Index

A

ActivityNode (class in makeprov.prov) AgentNode (class in makeprov.prov) apply() (makeprov.Config method) (makeprov.config.Config method)

as_inpath() (makeprov.OutPath method) (makeprov.paths.OutPath method)

B

base_iri (makeprov.config.ProvenanceConfig attribute) (makeprov.prov.Prov attribute) (makeprov.ProvenanceConfig attribute) BaseNode (class in makeprov.prov)

build() (in module makeprov) (in module makeprov.core) build_all() (in module makeprov) (in module makeprov.core) build_prov_from_snakemake() (in module makeprov.snakemake)

C

CachedDownload (class in makeprov) (class in makeprov.paths) children (makeprov.InDir property) (makeprov.OutDir property) (makeprov.paths.InDir property) (makeprov.paths.OutDir property) clone_with() (makeprov.Config method) (makeprov.config.Config method) commands (makeprov.core.Session attribute) (makeprov.Session attribute)

comment (makeprov.prov.ActivityNode attribute) Config (class in makeprov) (class in makeprov.config) context (makeprov.config.ProvenanceConfig attribute) (makeprov.prov.Prov attribute) (makeprov.ProvenanceConfig attribute) context_url (makeprov.config.ProvenanceConfig attribute) (makeprov.ProvenanceConfig attribute) create() (makeprov.prov.Prov class method)

D

dep_templates (makeprov.core.Rule attribute) DepNode (class in makeprov.prov) deps (makeprov.core.Rule attribute) download_file() (in module makeprov.paths)

dry_run (makeprov.config.ProvenanceConfig attribute) (makeprov.ProvenanceConfig attribute) dry_run_build() (in module makeprov) (in module makeprov.core)

E

endedAtTime (makeprov.prov.ActivityNode attribute) EnvNode (class in makeprov.prov)

explain() (in module makeprov) (in module makeprov.core) extent (makeprov.prov.FileEntity attribute)

F

fields_subclass_first() (makeprov.RDFMixin class method) (makeprov.rdfmixin.RDFMixin class method) file() (makeprov.InDir method) (makeprov.OutDir method) (makeprov.paths.InDir method) (makeprov.paths.OutDir method) FileEntity (class in makeprov.prov) flush_prov_buffer() (in module makeprov.core)

force (makeprov.config.ProvenanceConfig attribute) (makeprov.ProvenanceConfig attribute) format (makeprov.prov.FileEntity attribute) frame (makeprov.config.ProvenanceConfig attribute) (makeprov.ProvenanceConfig attribute) from_jsonld() (makeprov.RDFMixin class method) (makeprov.rdfmixin.RDFMixin class method) func (makeprov.core.Rule attribute)

G

generatedAtTime (makeprov.prov.GraphEntity attribute) get() (makeprov.Config class method) (makeprov.config.Config class method)

get_d3dag_json() (in module makeprov.snakemake) get_detailed_summary() (in module makeprov.snakemake) GraphEntity (class in makeprov.prov)

H

hasVersion (makeprov.prov.AgentNode attribute) (makeprov.prov.EnvNode attribute)

I

id (makeprov.prov.BaseNode attribute) identifier (makeprov.prov.FileEntity attribute) InDir (class in makeprov) (class in makeprov.paths)

InPath (class in makeprov) (class in makeprov.paths) is_stream (makeprov.paths.ProvPath property) (makeprov.ProvPath property)

L

label (makeprov.prov.AgentNode attribute) (makeprov.prov.DepNode attribute) (makeprov.prov.EnvNode attribute)

list_rules() (in module makeprov) (in module makeprov.core) list_targets() (in module makeprov) (in module makeprov.core)

M

main() (in module makeprov) (in module makeprov.config) (in module makeprov.snakemake) makeprov module makeprov.config module makeprov.core module makeprov.paths module makeprov.prov module makeprov.rdfmixin module

makeprov.snakemake module merge (makeprov.config.ProvenanceConfig attribute) (makeprov.ProvenanceConfig attribute) merge() (makeprov.prov.Prov class method) modified (makeprov.prov.FileEntity attribute) module makeprov makeprov.config makeprov.core makeprov.paths makeprov.prov makeprov.rdfmixin makeprov.snakemake

N

name (makeprov.core.Rule attribute) (makeprov.prov.Prov attribute) needs_update() (in module makeprov) (in module makeprov.core)

new_session() (in module makeprov) (in module makeprov.core)

O

open() (makeprov.CachedDownload method) (makeprov.InPath method) (makeprov.OutPath method) (makeprov.paths.CachedDownload method) (makeprov.paths.InPath method) (makeprov.paths.OutPath method) (makeprov.paths.ProvPath method) (makeprov.ProvPath method)

out_fmt (makeprov.config.ProvenanceConfig attribute) (makeprov.ProvenanceConfig attribute) out_parsers (makeprov.core.Rule attribute) out_templates (makeprov.core.Rule attribute) OutDir (class in makeprov) (class in makeprov.paths) OutPath (class in makeprov) (class in makeprov.paths) outputs (makeprov.core.Rule attribute)

P

pattern_rules (makeprov.core.Session attribute) (makeprov.Session attribute) pep503_normalize() (in module makeprov.prov) phony (makeprov.core.Rule attribute) plan() (in module makeprov) (in module makeprov.core) project_metadata() (in module makeprov.prov) Prov (class in makeprov.prov) prov_buffers (makeprov.core.Session attribute) (makeprov.Session attribute)

prov_dir (makeprov.config.ProvenanceConfig attribute) (makeprov.ProvenanceConfig attribute) prov_path (makeprov.config.ProvenanceConfig attribute) (makeprov.ProvenanceConfig attribute) ProvDoc (class in makeprov.prov) provenance (makeprov.prov.Prov attribute) (makeprov.prov.ProvDoc attribute) ProvenanceConfig (class in makeprov) (class in makeprov.config) ProvPath (class in makeprov) (class in makeprov.paths)

R

RDFMixin (class in makeprov) (class in makeprov.rdfmixin) requires (makeprov.prov.EnvNode attribute) resolve_target() (in module makeprov) (in module makeprov.core) results (makeprov.prov.Prov attribute) root_targets() (in module makeprov) (in module makeprov.core)

Rule (class in makeprov.core) rule() (in module makeprov) (in module makeprov.core) rules_by_name (makeprov.core.Session attribute) (makeprov.Session attribute) rules_by_target (makeprov.core.Session attribute) (makeprov.Session attribute)

S

Session (class in makeprov) (class in makeprov.core) set() (makeprov.Config class method) (makeprov.config.Config class method) source (makeprov.prov.AgentNode attribute)

span (class in makeprov) start_prov_buffer() (in module makeprov.core) startedAtTime (makeprov.prov.ActivityNode attribute) stream_name (makeprov.paths.ProvPath property) (makeprov.ProvPath property)

T

title (makeprov.prov.EnvNode attribute) to_dot() (in module makeprov) (in module makeprov.core) to_graph() (makeprov.prov.Prov method) (makeprov.RDFMixin method) (makeprov.rdfmixin.RDFMixin method)

to_jsonld() (makeprov.prov.Prov method) (makeprov.RDFMixin method) (makeprov.rdfmixin.RDFMixin method) type (makeprov.prov.BaseNode attribute)

U

used (makeprov.prov.ActivityNode attribute)

W

wasAssociatedWith (makeprov.prov.ActivityNode attribute) wasAttributedTo (makeprov.prov.GraphEntity attribute)

wasGeneratedBy (makeprov.prov.FileEntity attribute) (makeprov.prov.GraphEntity attribute) write() (makeprov.prov.Prov method)