makeprov.snakemake

Functions

build_prov_from_snakemake(dag, summary_rows, ...)
dataclass([cls, init, repr, eq, order, ...])	Add dunder methods based on the fields defined in the class.
get_d3dag_json(snakemake_exe, ...)	Call snakemake --d3dag and decode the resulting JSON.
get_detailed_summary(snakemake_exe, ...)	Call snakemake --detailed-summary and parse its tabular output.
main([argv])

Classes

ActivityNode(id, type[, startedAtTime, ...])
AgentNode(id, type[, label, hasVersion, source])
Any(*args, **kwargs)	Special type indicating an unconstrained type.
FileEntity(id, type[, format, extent, ...])
Path(*args, **kwargs)	PurePath subclass that can make system calls.
Prov(base_iri, name, provenance, results[, ...])
ProvenanceConfig([base_iri, prov_dir, ...])	Runtime configuration for provenance generation.
datetime(year, month, day[, hour[, minute[, ...)	The year, month and day arguments are required.

makeprov.snakemake.build_prov_from_snakemake(dag, summary_rows, *, config, name='snakemake')

Return type:

Prov

makeprov.snakemake.get_d3dag_json(snakemake_exe, snakemake_args, *, forceall_dag)

Call snakemake --d3dag and decode the resulting JSON.

Return type:

dict[str, Any]

makeprov.snakemake.get_detailed_summary(snakemake_exe, snakemake_args)

Call snakemake --detailed-summary and parse its tabular output.

Return type:

list[dict[str, str]]

makeprov.snakemake.main(argv=None)

Return type:

int